代表性论文：
1. Yushan Qiu, Lingfei Yang, Hao Jiang, Quan Zou. scTPC: a novel semi-supervised deep clustering model for scRNA-seq data. Bioinformatics, 2024, btae293（数学学会T1）.
2. Yushan Qiu, Yahooing Zhang, Liwen Tian, Quan Zou, Pu Zhao. Identification of a comprehensive alternative splicing function during epithelial-mesenchymal transition. iScience, 2023, 26(4):106517 (CELL 子刊)
3. Liangjie Sun, Yushan Qiu(*通讯作者), Wai-Ki Ching, Pu Zhao, Quan Zou. PCB: a pseudotemporal causality-based Bayesian approach to identify EMT-associated regulatory relationships of AS events and RBPs during breast cancer progression. PLoS Computational Biology. 2023, 19(3): e1010939. (学生一作，中科院大类2区)
4. Yushan Qiu, Chang Yan, Pu Zhao, Quan Zou. SSNMDI: a novel joint learning model of semi-supervised non-negative matrix factorization and data imputation for clustering of single-cell RNA-seq data. Briefings in Bioinformatics, 2023, bbad149. （中科院1区Top期刊，JCR Q1，IF 2020：11.622）
5. Hao Jiang, Dong Shen, Wai-Ki Ching, Yushan Qiu(*通讯作者). A High-Order Norm-Product Regularized Multiple Kernel Learning Framework for Kernel Optimization, Information Sciences, 2022. 606:72-97. （中科院大类1区Top期刊，JCR Q1）
6. Ying Yang, Sha Tian, Yushan Qiu(*通讯作者), Pu Zhao, Quan Zou, MDICC: novel method for multi-omics data integration and cancer subtype identification, Briefings in Bioinformatics, Volume 23, Issue 3, May 2022, bbac132, https://doi.org/10.1093/bib/bbac132. (中科院1区Top期刊，JCR Q1，IF 2021：11.622，学生一作）
7. Yushan Qiu, Wai-Ki Ching, Quan Zou. Matrix factorization-based data fusion for the prediction of RNA-binding protein and alternative splicing event associations during epithelial-mesenchymal transition. Briefings in Bioinformatics, 2021, Doi:10.1093/bib/bbab332. （中科院1区Top期刊，JCR Q1，IF 2020：11.622）
8. Yushan Qiu, Wai-Ki Ching, Quan Zou. Prediction of RNA-binding protein and alternative splicing event associations during epithelial-mesenchymal transition based on inductive matrix completion. Briefings in Bioinformatics. doi: 10.1093/bib/bbaa440. （中科院1区Top期刊，JCR Q1，IF 2020：11.622）
9. Yushan Qiu, Hao Jiang, Wai-Ki Ching. Unsupervised learning framework with multidimensional scaling in predicting epithelial-mesenchymal transitions. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020, doi: 10.1109/TCBB.2020.2992605. （中科院小类2区，JCR Q1，IF 2020: 3.015）
10. Yushan Qiu, Jingyi Lyu, Mikayla Dunlap, Sameul E. Harvey, Chonghui Cheng. A combinatorially regulated RNA splicing signature predicts breast cancer EMT states and patient survival. RNA, 2020, 10.1261/rna.074187.119. （中科院大类2区，JCR Q1，IF 2020: 4.942）
11. Hao Jiang, Yushan Qiu(*通讯作者), Wenpin Hou, Xiaoqing Cheng, Manyi Yim, Wai-Ki Ching. Drug side-effect profiles prediction: from empirical risk minimization to structural risk minimization. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2020, 17(2): 402-410. （中科院大类2区，JCR Q1，IF 2020: 4.942）
12. Yushan Qiu, Hao Jiang, Wai-Ki Ching, Xiaoqing Cheng. Discovery of Boolean metabolic networks: integer linear programming based approach. BMC Systems Biology, 2018, 12(1): 53-60. （中科院小类2区，JCR: Q2, IF 2018: 2.048）
13. Hao Jiang, Wai-Ki Ching, Ka Fai Cedric Yiu, Yushan Qiu(*通讯作者). Stationary mahalanobis kernel SVM for credit risk evaluation. Applied Soft Computing, 2018, 71: 407-417. （中科院升级版大类1区，JCR: Q1, IF 2018: 4.873）